Supporting datasets for SBGNview package
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Documentation for package ‘SBGNview.data’ version 1.18.0
Help Pages
| cancer.ds | A demo microarray dataset from a cancer study |
| chebi_compound.name | Mapping table between two types of IDs |
| chebi_kegg | Mapping table between two types of IDs |
| chebi_metacyc.SBGN | Mapping table between two types of IDs |
| chebi_pathway.id | Mapping table between two types of IDs |
| chebi_pathwayCommons | Mapping table between two types of IDs |
| compound.name_kegg | Mapping table between two types of IDs |
| compound.name_pathway.id | Mapping table between two types of IDs |
| compound.name_pathwayCommons | Mapping table between two types of IDs |
| ENZYME_pathway.id | Mapping table between two types of IDs |
| hsa_ENTREZID_pathwayCommons | Mapping table between two types of IDs |
| hsa_KO_ENTREZID | Mapping table between two types of IDs |
| hsa_pathwayCommons_ENSEMBL | Mapping table between two types of IDs |
| IFNg | RNA-Seq result from a mouse IFNG knockout experiment |
| kegg_pathwayCommons | Mapping table between two types of IDs |
| KO_pathway.id | Mapping table between two types of IDs |
| KO_pathwayCommons | Mapping table between two types of IDs |
| mapping | Mapping table between two types of IDs |
| mmu_KO_ENSEMBL | Mapping table between two types of IDs |
| mmu_KO_ENTREZID | Mapping table between two types of IDs |
| mmu_pathwayCommons_ENSEMBL | Mapping table between two types of IDs |
| mmu_pathwayCommons_ENTREZID | Mapping table between two types of IDs |
| pathway.completeness.cutoff.info | Cutoffs of pathway completeness used for defining existance of pathway in a species |
| pathway.species.pct_Mapped | Pathway completeness in a species |
| pathwayCommons_SYMBOL | Mapping table between two types of IDs |
| sbgn.xmls | XML code of a SBGN-ML file |
| SYMBOL_pathway.id | Mapping table between two types of IDs |