Package: diffloop
Type: Package
Title: Identifying differential DNA loops from chromatin topology data
Version: 1.24.0
Date: 2021-11-20
Authors@R: c(
    person("Caleb", "Lareau", email = "caleblareau@g.harvard.edu", role = c("aut", "cre")),
    person("Martin", "Aryee", email = "aryee.martin@mgh.harvard.edu", role = "aut")
    )
Maintainer: Caleb Lareau <caleblareau@g.harvard.edu>
Author: Caleb Lareau [aut, cre], Martin Aryee [aut]
Description: A suite of tools for subsetting, visualizing, annotating,
    and statistically analyzing the results of one or more ChIA-PET
    experiments or other assays that infer chromatin loops. 
Imports: methods, GenomicRanges, foreach, plyr, dplyr, reshape2,
        ggplot2, matrixStats, Sushi, edgeR, locfit, statmod, biomaRt,
        GenomeInfoDb, S4Vectors, IRanges, grDevices, graphics, stats,
        utils, Biobase, readr, data.table, rtracklayer, pbapply, limma
License: MIT + file LICENSE
URL: https://github.com/aryeelab/diffloop
BugReports: https://github.com/aryeelab/diffloop/issues
Suggests: DESeq2, diffloopdata, ggrepel, knitr, rmarkdown, testthat
VignetteBuilder: knitr
RoxygenNote: 5.0.1
Collate: 'diffloop.R' 'diffloop-class.R' 'data.R' 'core.R'
        'pipeline_io.R' 'loopFunctions.R' 'sugar.R' 'union.R'
        'annotation.R' 'assoc.R' 'colData.R' 'mangoFunctions.R'
        'plotting.R' 'ruan.R' 'zzz.R'
biocViews: Preprocessing, QualityControl, Visualization, DataImport,
        DataRepresentation, GO
NeedsCompilation: no
PackageStatus: Deprecated
git_url: https://git.bioconductor.org/packages/diffloop
git_branch: RELEASE_3_15
git_last_commit: d5d5f0f
git_last_commit_date: 2022-04-26
Date/Publication: 2022-04-26
Packaged: 2022-04-26 20:29:52 UTC; biocbuild
Depends: R (>= 3.5.0)
Built: R 4.6.1; ; 2026-07-16 07:28:23 UTC; unix
