# Generated by roxygen2: do not edit by hand

export(DESeqDataSetFromSlidingWindows)
export(extractRegions)
export(filterCounts)
export(resultsDEWSeq)
export(toBED)
export(topWindowStats)
import(BiocParallel)
import(DESeq2)
import(S4Vectors)
importFrom(BiocGenerics,sort)
importFrom(BiocGenerics,strand)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,reduce)
importFrom(S4Vectors,na.omit)
importFrom(Seqinfo,seqnames)
importFrom(Seqinfo,sortSeqlevels)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowRanges)
importFrom(data.table,fread)
importFrom(data.table,getDTthreads)
importFrom(data.table,setDTthreads)
importFrom(methods,as)
importFrom(methods,is)
importFrom(stats,p.adjust)
importFrom(stats,pnorm)
importFrom(stats,pt)
importFrom(stats,qf)
importFrom(stats,terms)
importFrom(stats,terms.formula)
importFrom(utils,packageVersion)
importFrom(utils,read.table)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
