CODEX-package           A Normalization and Copy Number Variation
                        Detection Method for Whole Exome Sequencing
bambedObjDemo           Demo data pre-stored for bambedObj.
choiceofK               Determine the number of latent factors K.
coverageObjDemo         Demo data pre-stored for coverageObj.
gcDemo                  Demo data pre-stored for GC content.
getbambed               Get bam file directories, sample names, and
                        exonic positions
getcoverage             Get depth of coverage from whole exome
                        sequencing
getgc                   Get GC content for each exonic target
getmapp                 Get mappability for each exonic target
mappDemo                Demo data pre-stored for mappability.
mapp_ref                Position reference for pre-computed mappability
                        results.
mappability             Pre-computed mappabilities
normObjDemo             Demo data pre-stored for normObj.
normalize               Normalization of read depth from whole exome
                        sequencing
normalize2              Normalization of read depth from whole exome
                        sequencing under the case-control setting
qc                      Quality control procedure for depth of coverage
qcObjDemo               Demo data pre-stored for qcObj.
segment                 Recursive segmentation algorithm for CNV
                        detection and genotyping
