Package: beadarray
Title: Quality assessment and low-level analysis for Illumina BeadArray
        data
Version: 2.62.1
Date: 2026-07-07
Author: Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt Ritchie
Maintainer: Mark Dunning <m.dunning@imperial.ac.uk>
Description: The package is able to read bead-level data (raw TIFFs and text 
    files) output by BeadScan as well as bead-summary data from BeadStudio.  
    Methods for quality assessment and low-level analysis are provided.
Depends: R (>= 3.5.0), BiocGenerics (>= 0.3.2), Biobase (>= 2.17.8),
        hexbin
Imports: limma, AnnotationDbi, stats4, reshape2, GenomicRanges,
        IRanges, methods, ggplot2, BeadDataPackR
Suggests: lumi, vsn, affy, hwriter, beadarrayExampleData,
        illuminaHumanv3.db, gridExtra, BiocStyle,
        TxDb.Hsapiens.UCSC.hg19.knownGene, ggbio, knitr
License: MIT + file LICENSE
biocViews: Microarray, OneChannel, QualityControl, Preprocessing
LazyData: yes
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/beadarray
git_branch: RELEASE_3_23
git_last_commit: 340c8f1
git_last_commit_date: 2026-07-07
Repository: Bioconductor 3.23
Date/Publication: 2026-07-09
NeedsCompilation: yes
Packaged: 2026-07-09 20:32:00 UTC; biocbuild
Built: R 4.6.1; x86_64-pc-linux-gnu; 2026-07-23 18:26:11 UTC; unix
