Murphy10 - SeqAn API Documentation

# Tag Murphy10
Specialization for ReducedAminoAcid#

Defined in | seqan/reduced_aminoacid.h
Signature | `typedef Murphy10 Tag<Murphy10_>;`

## Detailed Description

This is the 10-character reduction defined by Murphy et al, 2000, https://www.ncbi.nlm.nih.gov/pubmed/10775656

This alphabet is used by many tools, e.g. Rapsearch2, Lambda, UBlast.

Since it was created from the 20-letter alphabet the clusters in SeqAn are not identical (they contain more symbols). This is the clustering:

    'A', // A O U X
      'B', // B D E N Q Z
      'C', // C
      'F', // F W Y *
      'G', // G
      'H', // H
      'I', // I J L M V
      'K', // K R
      'P', // P
      'S'  // S T

#### Dox Sources

    /*!
     * @tag Murphy10
     *
     * @headerfile seqan/reduced_aminoacid.h
     *
     * @brief Specialization for @link ReducedAminoAcid @endlink#
     *
     * @signature typedef Murphy10 Tag<Murphy10_>;
     *
     * This is the 10-character reduction defined by Murphy et al, 2000, <a href="ht
     * tps://www.ncbi.nlm.nih.gov/pubmed/10775656">https://www.ncbi.nlm.nih.gov/pubm
     * ed/10775656</a>
     *
     * This alphabet is used by many tools, e.g. Rapsearch2, Lambda, UBlast.
     *
     * Since it was created from the 20-letter alphabet the clusters in SeqAn are
     * not identical (they contain more symbols). This is the clustering:
     *
     * @code{.txt}
     *   'A', // A O U X
     *   'B', // B D E N Q Z
     *   'C', // C
     *   'F', // F W Y *
     *   'G', // G
     *   'H', // H
     *   'I', // I J L M V
     *   'K', // K R
     *   'P', // P
     *   'S'  // S T
     * @endcode
     */