allelicTDT              Allelic TDT
colEMlrt                EM Likelihood Ratio Test
colGxE                  Genotypic TDT for Gene-Environment Interactions
colGxGPerms             Permutation-Based gTDT for Two-Way Interactions
colNtrios               Frequency of Genotype Combinations
colPOlrt                Parent-of-Origin Tests
colTDTmaxTest           Maximum Genotypic TDT
colTDTsam               SAM and EBAM for Trio Data
combineNtrios           Combining Matrices with Frequencies of Genotype
                        Combinations
findLDblocks            Identifying LD blocks
getLD                   Computation of LD Measures
getMatPseudo            Generates Case-Pseudo-Control Matrix
lrControl               Control Parameters for Trio Logic Regression
ntrios2Dom              Frequency of Dominant or Recessive Genotype
                        Combinations
ped2geno                Transformation of Ped-File
plot.LDblocks           Plotting a LDblock Object
plot.getLD              Plotting a getLD or getLDlarge Object
plot.trioLR             Plotting for trioLR Objects
poly4root               Roots of a Fourth Degree Polynomial
print.colGxE            Printing and Storing of colGxE objects
print.trioFS            Printing and plotting of a trioFS object
print.trioLR            Printing of trioLR Objects
probTDT                 TDT on genotype probabilities matrix
read.pedfile            Reading a Ped File
removeSNPs              Remove SNPs or Trios
scoreTDT                Score Tests for SNPs, GxE, and GxG Interactions
tdt                     Genotypic TDT
tdtGxG                  Genotypic TDT for Two-Way Interactions
trio.check              Check Case-Parent Trio Data for Mendelian
                        Errors
trio.data               Case-Parent Trio Data
trio.permTest           Permutation Tests for Trio Logic Regression
trio.power              Power and sample size calculation
trio.prepare            Generate Trio Data Format Suitable for Trio
                        Logic Regression
trio.sim                Simulate Case-Parent Trios
trioFS                  Trio Feature Selection
trioLR                  Trio Logic Regression
vcf2geno                Transformation of VFC File
