R: A Tidy Tool for Phylogenetic Tree Data Manipulation

# A Tidy Tool for Phylogenetic Tree Data Manipulation

## Documentation for package ‘tidytree’ version 0.4.7

- DESCRIPTION file
- Package NEWS

## Help Pages

ancestor | ancestor
ancestor.tbl_tree | ancestor
as.treedata | as.treedata
as.treedata.tbl_tree | as.treedata
as.ultrametric | as.ultrametric
child | child
child.tbl_tree | child
drop.tip | drop.tip method
drop.tip,phylo | drop.tip method
drop.tip,treedata | drop.tip method
drop.tip-method | drop.tip method
get.data | get.data method
get.data-method | get.data method
get.fields | get.fields method
get.fields,treedata | get.fields method
get.fields-method | get.fields method
get.treetext | get.treetext method
get.treetext-method | get.treetext method
getNodeNum | getNodeNum
get_tree_data | get_tree_data
groupClade | groupClade
groupOTU | groupOTU
isTip | isTip
isTip.phylo | isTip
isTip.tbl_tree | isTip
isTip.treedata | isTip
keep.tip | drop.tip method
keep.tip-method | drop.tip method
MRCA | MRCA
Nnode.treedata | Nnode
node.label | extract the node label of phylo, treedata or tbl_tree
node.label<- | the tip or internal node label assign of tbl_tree phylo and treedata
node.label<-.phylo | the tip or internal node label assign of tbl_tree phylo and treedata
node.label<-.tbl_tree | the tip or internal node label assign of tbl_tree phylo and treedata
node.label<-.treedata | the tip or internal node label assign of tbl_tree phylo and treedata
nodeid | nodeid
nodelab | nodelab
offspring | offspring
offspring.tbl_tree | offspring
parent | parent
parent.tbl_tree | parent
root.treedata | root
rootnode | rootnode
show | show method
show-method | Class "treedata" This class stores phylogenetic tree with associated data
sibling | sibling
td-label-assign | the tip or internal node label assign of tbl_tree phylo and treedata
tip.label | extract the tip label of phylo treedata or tbl_tree
tip.label<- | the tip or internal node label assign of tbl_tree phylo and treedata
tip.label<-.phylo | the tip or internal node label assign of tbl_tree phylo and treedata
tip.label<-.tbl_tree | the tip or internal node label assign of tbl_tree phylo and treedata
tip.label<-.treedata | the tip or internal node label assign of tbl_tree phylo and treedata
treedata | treedata
treedata-class | Class "treedata" This class stores phylogenetic tree with associated data
tree_subset | Subset tree objects by related nodes
tree_subset.phylo | Subset tree objects by related nodes
tree_subset.treedata | Subset tree objects by related nodes