Hammer2months           An example of real experiment.
Sultan                  An example of real experiment.
Tuch                    An example of real experiment.
countsTable             An Example Simulation Data
drawMA_vol              Draw MA Plot and Volcano Plot
ecdfAUC                 Draw Empirical Cumulative Density Function
                        (ECDF) plot
equalSpace              Calculate Grouped Shrinkage Estimates
exactNBtest1            Perform only one exact test under the Negative
                        Binomial modeling.
getAdjustDisp           Calculate Shrinkage (SH) Estimates for
                        Dispersion
getNormFactor           Estimate size factors
getQ                    Estimate the shrinkage target based on the
                        quantiles of initial targets
getT                    Estimate the shrinkage target based on the
                        initial estimates
getTgroup               This is an internal function used to calculate
                        the shrinkage estimation when multiple
                        shrinkage targets are considered.
nbTestSH                Differential Analysis based on RNA-seq
                        experiments using Negative Binomial (NB) Model
                        with Shrinkage Approach of Dispersion
                        Estimation.
nbinomTestForMatricesSH
                        Exact test under Negative Binomial Test with
                        Shrinkage Estimates on Dispersions
plotDispersion          Drawing Dispersion-Mean plot.
rnbinomMV               Randomly Generate Negative Binomial Variable
                        with parameters mean and variance.
rowVars                 Calculating the sample variance within each row
                        of A matrix
sSeq-package            Shrinkage estimation of dispersion in Negative
                        Binomial models for RNA-seq experiments with
                        small sample size
sim                     Generating Simulated Data
