R: Estimating Abundance of Clones from DNA Fragmentation Data

# Estimating Abundance of Clones from DNA Fragmentation Data

## Documentation for package ‘sonicLength’ version 1.4.7

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

sonicLength-package | Calibration of Number of Length Variants
A1 | HTLV-1 Fragment Length Data
dfrag | Simple Fragment Length Distribution
estAbund | estimate Abundances from sonicated samples
Ey.given.x | E-Step for Abundance Estimation
maxEM | maximum likelihood estimates relative abundances
maxEM.iter.control | iteration controls
mstep | M-step to maximize theta
pfrag | Simple Fragment Length Distribution
phi.update.lframe | estimate phi
pr.y.given.x | E-Step for Abundance Estimation
qfrag | Simple Fragment Length Distribution
rfrag | Simple Fragment Length Distribution
simSonic | Simulate Sonicated Data
sonicLength | Calibration of Number of Length Variants