data set for R package seq2pathway

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Documentation for package ‘seq2pathway.data’ version 1.43.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS

Help Pages

dat_gene2path_chip	demo result of gene2pathway function from chip seq data
dat_gene2path_RNA	demo result of gene2pathway function from RNA seq data
dat_seq2pathway_GOterms	demo result of seq2pathway function from chip seq data
dat_seq2pathway_Msig	demo result of seq2pathway function from chip seq data
Des_BP_list	Description of GO term BP
Des_CC_list	Description of GO term CC
Des_MF_list	Description of GO term MF
gencode_coding	Coding gene list in GENCODE 20.
gene_description	demo data of adding gene description
GO_BP_list	Gene symbol list of GO term BP
GO_CC_list	Gene symbol list of GO term CC
GO_GENCODE_df_hg_v19	intersection genes of GO terms and GENCODE 19
GO_GENCODE_df_hg_v36	intersection genes of GO terms and GENCODE 36
GO_GENCODE_df_mm_vM1	intersection genes of GO terms and GENCODE vM1
GO_GENCODE_df_mm_vM25	intersection genes of GO terms and GENCODE vM25
GO_MF_list	Gene symbol list of GO term MF
MsigDB_C5	MsigDB data set
Msig_GENCODE_df_hg_v19	intersection genes of MSigDB collection and GENCODE 19
Msig_GENCODE_df_hg_v36	intersection genes of MSigDB collection and GENCODE 36
Msig_GENCODE_df_mm_vM1	intersection genes of MSigDB collection and GENCODE vM1
Msig_GENCODE_df_mm_vM25	intersection genes of MSigDB collection and GENCODE vM25