## import
importClassesFrom(Biobase, AnnotatedDataFrame, AssayData, eSet,
                  Versioned, VersionedBiobase,
                  ExpressionSet, MIAME, Versions)

importClassesFrom(methods, character, data.frame, numeric, POSIXct)

importMethodsFrom(Biobase, exprs, "exprs<-", featureData,
                  "featureData<-", "featureNames<-", pData, "pData<-",
                  "phenoData<-")

importMethodsFrom(methods, show)

importFrom(graphics, abline, grid, layout, legend, lines, matplot,
           par, plot, segments, title, axis, hist, image, mtext,
           plot.new, rect, text)

importFrom(methods, as, is, new, validObject)

importFrom(RColorBrewer, brewer.pal)

importFrom(stats, approx, quantile, relevel, sd, smooth.spline,
           spline, time, as.dendrogram, density, dist, hclust, median,
           order.dendrogram, reorder)

importFrom(utils, read.table)
importFrom(gtools, invalid)
importFrom(Biobase, "assayDataElement<-")

## exports
### class
exportClasses("RTCAtimeline", #"RTCAhistory",
              "RTCA")
### methods
exportMethods("actionTrack",
              "actionTrack<-",
              "timeUnit",
              "timeUnit<-",
              "startTime",
              "startTime<-",
              "getAction",
              "addAction",
              "rmAction",
              "orderAction",
              "updateAction",
              "reset",
              "expID",
              "expID<-",
              "timeline",
              "timeline<-",
              "timepoints",
              "timepoints<-",
              "plot")
### functions
export("alphaNames",
       "repairAlphaName",
       "alphaNames2Pos",
       "rowcol2pos",
       "factor2numeric",
       "relevels",
       "parseRTCA",
       "combineRTCA",
       "nearestTimeIndex",
       "sliceRTCA")
export("ratioTransform",
       "smoothTransform",
       "interpolationTransform",
       "derivativeTransform",
       "rgrTransform")
export("plotGridEffect",
       "controlView",
       "plateView")
export("spectramaxImport")
