Package: Rmagic
Type: Package
Title: MAGIC - Markov Affinity-Based Graph Imputation of Cells
Version: 2.0.3
Authors@R: c(person(given = "David", family = "van Dijk", email = "davidvandijk@gmail.com", role = c("aut")),
		         person(given = 'Scott', family = 'Gigante', email = 'scott.gigante@yale.edu', role = 'cre', 
		                comment = c(ORCID = '0000-0002-4544-2764')))
Maintainer: Scott Gigante <scott.gigante@yale.edu>
Description: MAGIC (Markov affinity-based graph imputation of cells) is a method for addressing technical noise in single-cell data, including under-sampling of mRNA molecules, often termed "dropout" which can severely obscure important gene-gene relationships. MAGIC shares information across similar cells, via data diffusion, to denoise the cell count matrix and fill in missing transcripts. Read more: van Dijk et al. (2018) <DOI:10.1016/j.cell.2018.05.061>.
Depends: R (>= 3.3), Matrix (>= 1.2-0)
Imports: methods, stats, reticulate (>= 1.4), ggplot2
Suggests: Seurat (>= 3.0.0), readr, viridis, phateR
License: GPL-2 | file LICENSE
LazyData: true
RoxygenNote: 6.1.1
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2019-11-20 23:59:32 UTC; scottgigante
Author: David van Dijk [aut],
  Scott Gigante [cre] (<https://orcid.org/0000-0002-4544-2764>)
Repository: CRAN
Date/Publication: 2019-11-21 15:30:02 UTC
Built: R 4.6.0; ; 2026-04-29 07:32:13 UTC; unix
