ProtGenerics-package	protgenerics
accessions	protgenerics
acquisitionNum	protgenerics
addProcessing	processingQueue
adjacencyMatrix	protgenerics
aggregateFeatures	protgenerics
alignRt	protgenerics
analyser	protgenerics
analyserDetails	protgenerics
analyzer	protgenerics
analyzerDetails	protgenerics
applyProcessing	processingQueue
as.list,Param-method	Param
backendBpparam	backendInitialize
backendInitialize	backendInitialize
backendMerge	backendInitialize
backendParallelFactor	backendInitialize
bin	protgenerics
calculateFragments	protgenerics
centroided	protgenerics
centroided<-	protgenerics
characterOrFunction-class	ProcessingStep
chromatogram	protgenerics
chromatograms	protgenerics
collisionEnergy	protgenerics
collisionEnergy<-	protgenerics
combineFeatures	protgenerics
compareChromatograms	protgenerics
compareSpectra	protgenerics
compounds	protgenerics
database	protgenerics
dataOrigin	protgenerics
dataOrigin<-	protgenerics
dataStorage	protgenerics
dataStorage<-	protgenerics
detectorType	protgenerics
estimatePrecursorIntensity	protgenerics
executeProcessingStep	ProcessingStep
expemail	protgenerics
exptitle	protgenerics
extractByIndex	extractByIndex
filterAcquisitionNum	protgenerics
filterDataOrigin	protgenerics
filterDataStorage	protgenerics
filterEmptySpectra	protgenerics
filterFeatures	filterFeatures
filterIntensity	protgenerics
filterIsolationWindow	protgenerics
filterMsLevel	protgenerics
filterMz	protgenerics
filterMzRange	protgenerics
filterMzValues	protgenerics
filterNA	protgenerics
filterPolarity	protgenerics
filterPrecursorCharge	protgenerics
filterPrecursorMz	protgenerics
filterPrecursorMzRange	protgenerics
filterPrecursorMzValues	protgenerics
filterPrecursorScan	protgenerics
filterProductMz	protgenerics
filterProductMzRange	protgenerics
filterProductMzValues	protgenerics
filterRanges	protgenerics
filterRt	protgenerics
filterSpectra	filterSpectra
filterValues	protgenerics
impute	protgenerics
instrumentCustomisations	protgenerics
instrumentManufacturer	protgenerics
instrumentModel	protgenerics
intensity	protgenerics
intensity<-	protgenerics
ionCount	protgenerics
ions	protgenerics
ionSource	protgenerics
ionSourceDetails	protgenerics
isCentroided	protgenerics
isolationWindowLowerMz	protgenerics
isolationWindowLowerMz<-	protgenerics
isolationWindowTargetMz	protgenerics
isolationWindowTargetMz<-	protgenerics
isolationWindowUpperMz	protgenerics
isolationWindowUpperMz<-	protgenerics
isReadOnly	backendInitialize
mass	protgenerics
modifications	protgenerics
msInfo	protgenerics
msLevel	protgenerics
msLevel<-	protgenerics
mz	protgenerics
mz<-	protgenerics
Param	Param
Param-class	Param
peaks	protgenerics
peaks<-	protgenerics
peaksData	peaksData
peaksData<-	peaksData
peaksVariables	peaksData
peptides	protgenerics
polarity	protgenerics
polarity<-	protgenerics
precAcquisitionNum	protgenerics
precScanNum	protgenerics
precursorCharge	protgenerics
precursorCharge<-	protgenerics
precursorIntensity	protgenerics
precursorIntensity<-	protgenerics
precursorMz	protgenerics
precursorMz<-	protgenerics
processingChunkFactor	processingQueue
processingChunkSize	processingQueue
processingChunkSize<-	processingQueue
processingData	protgenerics
processingData<-	protgenerics
processingQueue	processingQueue
ProcessingStep	ProcessingStep
ProcessingStep-class	ProcessingStep
productMz	protgenerics
productMz<-	protgenerics
proteins	protgenerics
ProtGenerics	protgenerics
psms	protgenerics
quantify	protgenerics
rtime	protgenerics
rtime<-	protgenerics
scanIndex	protgenerics
scans	protgenerics
setBackend	backendInitialize
show,Param-method	Param
show,ProcessingStep-method	ProcessingStep
smooth	protgenerics
smoothed	protgenerics
smoothed<-	protgenerics
spectra	protgenerics
spectra<-	protgenerics
spectraData	protgenerics
spectraData<-	protgenerics
spectraNames	protgenerics
spectraNames<-	protgenerics
spectrapply	protgenerics
spectraVariables	protgenerics
supportsSetBackend	backendInitialize
tic	protgenerics
tolerance	protgenerics
uniqueMsLevels	protgenerics
writeMSData	protgenerics
