bock                    Gene Expression Matrix of Published Data
diagnosticsVarPlots     Plots the average expression against
                        variability using different summary statistics.
diagnosticsVarPlotsTwoSample
                        Plots the average expression against
                        variability using different summary statistics
                        when comparing 2 groups of samples to each
                        other.
geneDistributionSet-class
                        Class '"geneDistributionSet"'
geneDistributionSet2-class
                        Class '"pathVarTwoSamplesCont"'
geneDistributionSet3-class
                        Class '"pathVarTwoSamplesDisc"'
geneSet-class           Class '"geneSet"'
getGenes                Gets significant genes within a certain window
                        of variability.
makeDBList              Puts your own list of pathways and genes
                        related to them into a list.
pathVar-package         Detects pathways with different levels of
                        variance than reference gene set variability.
pathVarOneSample        Compares the distribution of genes in each
                        cluster to the distribution of genes in each
                        cluster for every pathway.
pathVarTwoSamplesCont   Compares the distribution of genes in each
                        pathway for two groups of samples that you
                        define.
pathVarTwoSamplesDisc   Compares the number of genes in clusters in
                        each pathway for two groups of samples that you
                        define.
plotAllTwoSampleDistributionCounts
                        Compares the distribution of genes in clusters
                        for every gene in your data set for two groups
                        of samples that you define and plot the counts.
plotPway                Checks if an object is from the one sample or
                        two samples cases and then plots reference
                        distribution and the chosen pathway.
pways.kegg              List containing pathway IDs, names, and genes
                        in each pathway
pways.reactome          List containing pathway IDs, names, and genes
                        in each pathway
saveAsPDF               Save the plots of the significant pathway or a
                        chosen list of pathways as a pdf.
sigPway                 A function checks if an object is from the one
                        sample or two samples cases and then finds the
                        significant pathways.
significantPathway-class
                        Class '"significantPathway"'
significantPathway2-class
                        Class '"significantPathway2"'
significantPathway3-class
                        Class '"significantPathway3"'
