R: A model for network-based prioritisation of genes

# A model for network-based prioritisation of genes

## Documentation for package ‘netprioR’ version 1.37.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

netprioR-package | Package: netprioR
bandwidth | bandwidth
cmn | Class Mass Normalization (CMN) from Zhu et al., 2003
conjugate_gradient | Conjugate Gradient Solver
cuthill_mckee | Cuthill McKee (CM) algorithm
fit | Fit 'netprioR' model
fit-method | Fit 'netprioR' model
laplacian | Graph Laplacian
learn | Fit netprioR model
netprioR | netprioR
netprioR-class | netprioR
netprioR-method | netprioR
norm_kern | Normalise kernel
plot.netprioR | Plot method for 'netprioR' objects
ranks | Retrieve ranked prioritisation list
ranks-method | Retrieve ranked prioritisation list
ROC | Compute ROC curve from netprioR model and true labels
ROC-method | Compute ROC curve from netprioR model and true labels
simulate_labels | Simulate labels
simulate_network_random | Simulate random networks with predefined number of members for each of the two groups and the number of neighbours for each node
simulate_network_scalefree | Simulate scalefree networks
simulate_phenotype | Simulate phenotypes correlated to labels pivoted into two groups
simulation | Example data: Simulated networks, phenotypes and labels for N = 1000 genes
weights | Retrieve network weights
weights-method | Retrieve network weights