NCI.demo.cyList         10 raw NCI networks from Nature curated
                        pathways and BioCarta imported as graphNEL
                        objects, for demonstration purpose
NCIgraph-class          Class NCIgraph
directedBFS             Uses a breadth first search on a directed graph
                        to identify which genes are regulated by a
                        particular node in the graph
edgesToMerge            Identifies edges that should be merged to parse
                        a NCI network
getNCIPathways          Loads networks from Cytoscape and parses them
getSubtype.NCIgraph     Returns a list of @KEGGEdgeSubType objects
                        describing each edge of the NCI network
is.NCIgraph             Assess whether a graph is a NCI graph
mergeNodes              Merges a given list of nodes in a graph
parseNCInetwork         Takes a NCI network and transforms it into a
                        simpler graph only representing
                        inhibition/activation relationships between
                        genes
propagateRegulation     Transforms the network in a way that each
                        Biochemical Reaction node pointing to a Complex
                        points to what is regulated by the complex and
                        updates the interaction types accordingly
translateNCI2GeneID     Gives the entrezID corresponding to the nodes
                        of a graph
