MSstatsSampleSize       MSstatsSampleSize: A package for optimal design
                        of high-dimensional MS-based proteomics
                        experiment
OV_SRM_train            The training set from a study for subjects with
                        ovarian cancer
OV_SRM_train_annotation
                        Annotation file for 'OV_SRM_train',
classification_results
                        Example of output from
                        designSampleSizeClassification function
designSampleSizeClassification
                        Estimate the mean predictive accuracy and mean
                        protein importance over all the simulated
                        datasets
designSampleSizeClassificationPlots
                        Visualization for sample size calculation in
                        classification
designSampleSizeHypothesisTestingPlot
                        Sample size calculation plot for hypothesis
                        testing
designSampleSizePCAplot
                        PCA plot for each simulation
estimateVar             Estimate the mean abundance and variance of
                        each protein in each condition.
meanSDplot              Mean-SD plot
simulateDataset         Simulate datasets with the given number of
                        biological replicates and proteins based on the
                        input _data_
simulated_datasets      Example of output from simulateDataset function
variance_estimation     Example of output from estimateVar function
