Package: MSGFplus
Type: Package
Title: An interface between R and MS-GF+
Version: 1.28.0
Date: 2020-09-01
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Description: This package contains function to perform peptide
    identification using the MS-GF+ algorithm. The package contains 
    functionality for building up a parameter set both in code and through a
    simple GUI, as well as running the algorithm in batches, potentially 
    asynchronously.
License: GPL (>= 2)
VignetteBuilder: knitr
SystemRequirements: Java (>= 1.7)
LazyLoad: yes
biocViews: ImmunoOncology, MassSpectrometry, Proteomics
Depends: methods
Imports: mzID, ProtGenerics
Suggests: knitr, testthat
Collate: 'MSGFplus-package.R' 'aaa.R' 'generics.R' 'msgfAsync.R'
        'msgfParTolerance.R' 'msgfParTda.R' 'msgfParProtocol.R'
        'msgfParNtt.R' 'msgfParModification.R'
        'msgfParModificationList.R' 'msgfParMatches.R'
        'msgfParLengthRange.R' 'msgfParIsotopeError.R'
        'msgfParInstrument.R' 'msgfParFragmentation.R'
        'msgfParEnzyme.R' 'msgfParChargeRange.R' 'msgfPar.R'
        'msgfPar-getters.R' 'zzz.R'
RoxygenNote: 6.0.1
PackageStatus: Deprecated
git_url: https://git.bioconductor.org/packages/MSGFplus
git_branch: RELEASE_3_14
git_last_commit: d0bdc5b
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-26 21:58:39 UTC; biocbuild
Built: R 4.6.0; ; 2026-04-27 12:52:08 UTC; unix
