# Generated by roxygen2: do not edit by hand

S3method(plot,MLSeq)
S3method(print,confMat)
export("control<-")
export("isModified<-")
export("isUpdated<-")
export("method<-")
export("normalization<-")
export("preProcessing<-")
export("ref<-")
export(availableMethods)
export(classify)
export(confusionMat)
export(control)
export(discreteControl)
export(input)
export(isModified)
export(isUpdated)
export(metaData)
export(method)
export(modelInfo)
export(normalization)
export(preProcessing)
export(predictClassify)
export(printAvailableMethods)
export(ref)
export(selectedGenes)
export(trainParameters)
export(trained)
export(transformation)
export(voomControl)
exportClasses(MLSeq)
exportClasses(MLSeqMetaData)
exportClasses(MLSeqModelInfo)
exportClasses(discrete.train)
exportClasses(voom.train)
exportMethods("control<-")
exportMethods("isModified<-")
exportMethods("isUpdated<-")
exportMethods("method<-")
exportMethods("normalization<-")
exportMethods("preProcessing<-")
exportMethods("ref<-")
exportMethods(confusionMat)
exportMethods(control)
exportMethods(input)
exportMethods(isModified)
exportMethods(isUpdated)
exportMethods(metaData)
exportMethods(method)
exportMethods(modelInfo)
exportMethods(normalization)
exportMethods(plot)
exportMethods(preProcessing)
exportMethods(predict)
exportMethods(print)
exportMethods(ref)
exportMethods(selectedGenes)
exportMethods(trainParameters)
exportMethods(trained)
exportMethods(transformation)
exportMethods(update)
import(Biobase)
import(DESeq2)
import(ggplot2)
import(methods)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,exprs)
importFrom(SummarizedExperiment,'colData<-')
importFrom(SummarizedExperiment,'mcols<-')
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,mcols)
importFrom(caret,'confusionMatrix.train')
importFrom(caret,'plot.train')
importFrom(caret,bag)
importFrom(caret,bagControl)
importFrom(caret,confusionMatrix)
importFrom(caret,createFolds)
importFrom(caret,predict.train)
importFrom(caret,svmBag)
importFrom(caret,train)
importFrom(caret,trainControl)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,cpm)
importFrom(foreach,'%do%')
importFrom(foreach,'%dopar%')
importFrom(foreach,foreach)
importFrom(grDevices,rgb)
importFrom(graphics,plot)
importFrom(graphics,segments)
importFrom(limma,lmFit)
importFrom(limma,voom)
importFrom(plyr,ldply)
importFrom(sSeq,getAdjustDisp)
importFrom(sSeq,getT)
importFrom(sSeq,rowVars)
importFrom(stats,approxfun)
importFrom(stats,as.dist)
importFrom(stats,lowess)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,napredict)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,relevel)
importFrom(stats,rexp)
importFrom(stats,rnbinom)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,xtabs)
importFrom(utils,globalVariables)
importFrom(xtable,print.xtable)
importFrom(xtable,xtable)
