Available-classifiers   Available classification/regression methods in
                        'MLSeq'
MLSeq-class             'MLSeq' object
MLSeq-package           Machine learning interface for RNA-Seq data
MLSeqMetaData-class     'MLSeqMetaData' object
MLSeqModelInfo-class    'MLSeqModelInfo' object
cervical                Cervical cancer data
classify                Fitting classification models to sequencing
                        data
confusionMat            Accessors for the 'confusionMat' slot.
control                 Accessors for the 'control' slot.
discrete.train-class    'discrete.train' object
discreteControl         Define controlling parameters for discrete
                        classifiers (NBLDA and PLDA)
input                   Accessors for the 'inputObject' slot of an
                        'MLSeq' object
isUpdated               Checks if MLSeq object is updated/modified or
                        not.
metaData                Accessors for the 'metaData' slot of an 'MLSeq'
                        object
method                  Accessors for the 'method'.
modelInfo               Accessors for the 'modelInfo' slot of an
                        'MLSeq' object
normalization           Accessors for the 'normalization' slot.
plot                    Plot accuracy results from 'MLSeq' object
preProcessing           Accessors for the 'preProcessing' slot of an
                        'MLSeq' object
predict                 Extract predictions from 'classify()' object
print.confMat           Print method for confusion matrix
ref                     Accessors for the 'ref' slot.
selectedGenes           Accessors for the 'selectedGenes'.
show                    Show method for MLSeq objects
trainParameters         Accessors for the 'trainParameters' slot.
trained                 Accessors for the 'trainedModel' slot.
transformation          Accessors for the 'transformation' slot.
update                  Update 'MLSeq' objects returnd from
                        'classify()'
voom.train-class        'voom.train' object
voomControl             Define controlling parameters for voom-based
                        classifiers
