$,MassArrayData-method	MassArrayData-class
$,MassArrayFragment-method	MassArrayFragment-class
$,MassArrayPeak-method	MassArrayPeak-class
$,MassArraySpectrum-method	MassArraySpectrum-class
$<-,MassArrayData-method	MassArrayData-class
$<-,MassArrayFragment-method	MassArrayFragment-class
$<-,MassArrayPeak-method	MassArrayPeak-class
$<-,MassArraySpectrum-method	MassArraySpectrum-class
ampliconPrediction	ampliconPrediction
analyzeCpGs	analyzeCpGs
bisConvert	bisConvert
calcMeth	calcMeth
calcMW	calcMW
calcPercentAdduct	calcPercentAdduct
calcPercentConversion	calcPercentConversion
combine	combine
combine,MassArrayData,MassArrayData-method	combine-methods
combine,MassArrayData,missing-method	combine-methods
combine-methods	combine-methods
convControl	convControl
countCGs	countCGs
createWiggle	createWiggle
estimatePrimerDimer	estimatePrimerDimer
evaluateSNPs	evaluateSNPs
expandSequence	expandSequence
findCollisions	findCollisions
findFragments	findFragments
findPeaks	findPeaks
identifySNPs	identifySNPs
importEpiTyperData	importEpiTyperData
importEpiTyperData.new	importEpiTyperData.new
initialize,MassArrayData-method	MassArrayData-class
initialize,MassArrayFragment-method	MassArrayFragment-class
initialize,MassArrayPeak-method	MassArrayPeak-class
initialize,MassArraySpectrum-method	MassArraySpectrum-class
inSilicoFragmentation	inSilicoFragmentation
isAssayable	isAssayable
MassArray.example.data	MassArray.example.data
MassArrayData-class	MassArrayData-class
MassArrayFragment-class	MassArrayFragment-class
MassArrayPeak-class	MassArrayPeak-class
MassArraySpectrum-class	MassArraySpectrum-class
numCollisions	numCollisions
plot.MassArrayData	plot.MassArrayData
position	position
position,MassArrayData-method	position-methods
position-methods	position-methods
position<-	position
position<-,MassArrayData,character-method	position-methods
position<-,MassArrayData,missing-method	position-methods
revComplement	revComplement
revComplement,character-method	revComplement-methods
revComplement,MassArrayData-method	revComplement-methods
revComplement-methods	revComplement-methods
rnaDigest	rnaDigest
samples	samples
samples,MassArrayData-method	samples-methods
samples-methods	samples-methods
samples<-	samples
samples<-,MassArrayData,character-method	samples-methods
samples<-,MassArrayData,missing-method	samples-methods
sum.MassArraySpectrum	sum.MassArraySpectrum
[,MassArrayData-method	MassArrayData-class
