R: Analytical Tools for MassArray Data

# Analytical Tools for MassArray Data

## Documentation for package ‘MassArray’ version 1.64.0

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

$-method | Class "MassArrayData"
$-method | Class "MassArrayFragment"
$-method | Class "MassArrayPeak"
$-method | Class "MassArraySpectrum"
$<--method | Class "MassArrayData"
$<--method | Class "MassArrayFragment"
$<--method | Class "MassArrayPeak"
$<--method | Class "MassArraySpectrum"
ampliconPrediction | Amplicon prediction
analyzeCpGs | Analyze CG methylation
bisConvert | Bisulphite conversion
calcMeth | Calculate percent methylation
calcMW | Calculate molecular weight
calcPercentAdduct | Calculate percent salt adducts
calcPercentConversion | Calculate percent conversion
combine | Combine MassArrayData objects
combine-method | Combine MassArrayData objects (methods)
combine-methods | Combine MassArrayData objects (methods)
convControl | Conversion control
countCGs | Count number of CGs
createWiggle | Create wiggle track
estimatePrimerDimer | Estimate Primer Dimers
evaluateSNPs | Evaluate SNPs
expandSequence | Expand nucleotide sequence
findCollisions | Find peak collisions
findFragments | Find fragments
findPeaks | Find peaks
identifySNPs | Identify SNPs
importEpiTyperData | Import EpiTyper data (v.1.0)
importEpiTyperData.new | Import EpiTyper data (v.1.0.5)
initialize-method | Class "MassArrayData"
initialize-method | Class "MassArrayFragment"
initialize-method | Class "MassArrayPeak"
initialize-method | Class "MassArraySpectrum"
inSilicoFragmentation | In silico fragmentation
isAssayable | Is assayable?
MassArray.example.data | MassArray Data object
MassArrayData-class | Class "MassArrayData"
MassArrayFragment-class | Class "MassArrayFragment"
MassArrayPeak-class | Class "MassArrayPeak"
MassArraySpectrum-class | Class "MassArraySpectrum"
numCollisions | Count peak collisions
plot.MassArrayData | Plot MassArrayData
position | Operate on positional information
position-method | Operate on positional information (methods)
position-methods | Operate on positional information (methods)
position<- | Operate on positional information
position<--method | Operate on positional information (methods)
revComplement | Reverse complement
revComplement-method | Reverse complement (methods)
revComplement-methods | Reverse complement (methods)
rnaDigest | RNA digest
samples | Operate on sample name(s)
samples-method | Operate on sample name(s) (methods)
samples-methods | Operate on sample name(s) (methods)
samples<- | Operate on sample name(s)
samples<--method | Operate on sample name(s) (methods)
sum.MassArraySpectrum | Sum MassArraySpectrum objects
[-method | Class "MassArrayData"