R: An R Package For Geneset Enrichment Workflows

# An R Package For Geneset Enrichment Workflows

## Documentation for package ‘hypeR’ version 2.10.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

clean_genesets | Clean labels of genesets
enrichr_available | Get enrichr available genesets
enrichr_download | Download data from enrichr in the form of a named list
enrichr_gsets | Download data from enrichr in the form of a gsets object
genesets_Server | Shiny server module for geneset selection
genesets_UI | Shiny interface module for geneset selection
ggempty | An empty ggplot
ggeplot | Enrichment plot implemented in ggplot
ggvenn | Venn diagram implemented in ggplot
gsets | A genesets object
hyp | A hyp object
hypeR | Calculate enrichment of one or more signatures
hyperdb_available | Check available data to download from hyperdb
hyperdb_gsets | Download data from hyperdb
hyperdb_rgsets | Download data from hyperdb in the form of a rgsets object
hyp_dots | Visualize hyp/multihyp objects as a dots plot
hyp_emap | Visualize hyp/multihyp objects as an enrichment map
hyp_hmap | Visualize hyp/multihyp objects as a hiearchy map
hyp_show | Convert a hyp object to a reactable table
hyp_to_excel | Export hyp/multihyp object to excel
hyp_to_graph | Convert a hyp object to an igraph object
hyp_to_rmd | Export hyp object to rmarkdown
hyp_to_table | Export hyp/multihyp object to table
limma | Differential Expression
msigdb_available | Get msigdbr available genesets
msigdb_download | Download data from msigdb in the form of a named list
msigdb_gsets | Download data from msigdb in the form of a gsets object
msigdb_info | Print msigdb gsets information
msigdb_species | Get msigdbr available species
msigdb_version | Get msigdbr package version number
multihyp | A multihyp object
rctbl_build | Reactable builder for hyp or mhyp objects
rctbl_hyp | Reactable table for hyp objects
rctbl_mhyp | Reactable table for multihyp objects
rgsets | A relational genesets object
wgcna | Co-expression Modules