R: File Handlers for Genomic Data Analysis

# File Handlers for Genomic Data Analysis

## Documentation for package ‘GenomicTools.fileHandler’ version 0.1.5.9

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

GenomicTools.fileHandler-package | R Package To Handle Files From Genomic Data GenomicTools.fileHandler is a loose collection of I/O Functions Needed in Genomic Data Analysis
example.bed | Example Gene Annotation in Bed-Format
example.fasta | Example Sequencing Reads in fasta-Format
example.fastq | Example Sequencing Reads in fastq-Format
example.gff | Example Gene Annotation in gff-Format
example.gtf | Example Gene Annotation in gtf-Format
example.ped | Example Variant data in ped/map-Format
example.vcf | Example Variant data in vcf-Format
example2.gtf.gz | Example Gene Annotation in zipped gtf-Format
exportBed | Exporting a Bed File.
exportFA | Exporting a Fasta File.
importBed | Importing a Bed File.
importBlastTab | Import a Tab Delimited Blast Output File
importFA | Importing a Fasta File.
importFeatureCounts | Import from FeatureCounts
importFQ | Importing a Fastq File.
importGFF | importGFF
importGFF3 | importGFF3
importGTF | Import a GTF File
importPED | importPED
importSTARLog | importSTARLog
importVCF | importVCF
importXML | importXML
plotTotalReads | plotTotalReads
plotUniquelyMappedReads | plotUniquelyMappedReads
prereadGTF | prereadGTF
print.bed | Print a bed Object
print.fa | Print a fa Object
print.featureCounts | Print a featureCounts Object
print.fq | Print a fq Object
print.gtf | Print a gtf Object
print.pedMap | Print a pedMap Object
print.vcf | Print a vcf Object
summary.bed | Summary of a bed Object
summary.fa | Summary of a fa Object
summary.featureCounts | Summary of a featureCounts Object
summary.fq | Summary of a fq Object
summary.gtf | Summary of a gtf Object
summary.STARLog | Summary of a STARLog Object