OGP-class               Class '"OGP"': an S4 class for genetic
                        plasticity analysis.
OGR-class               Class '"OGR"': an S4 class for rooting
                        analysis.
geneplast-package       Geneplast: an R package for evolutionary
                        rooting and plasticity inference based on
                        orthologous groups distribution.
gpdata.gs               A pre-processed dataset for the geneplast
                        package.
gplast                  Evolutionary plasticity inference.
gplast.get              Get information from individual slots in an OGP
                        object.
gplast.preprocess       Evolutionary plasticity inference.
groot                   Evolutionary rooting inference.
groot.get               Get information from individual slots in an OGR
                        object.
groot.plot              Plot the inferred evolutionary root of a given
                        OG or the map of LCAs of a given species.
groot.preprocess        Evolutionary rooting inference.
ogr2igraph              Integrates evolutionary rooting information and
                        graphs.
ogr2tni                 Integrates evolutionary rooting information and
                        regulatory networks.
ppi.gs                  A pre-processed igraph object for the geneplast
                        package.
