Package: gcatest
Title: Genotype Conditional Association TEST
Version: 2.10.0
Authors@R: c(
    person(given = "Wei",
	   family = "Hao",
	   role = "aut",
	   email = "whao@princeton.edu"),
    person(given = "Minsun",
	   family = "Song",
	   role = "aut"),
    person(given = "Alejandro",
	   family = "Ochoa",
	   role = c("aut", "cre"),
	   email = "alejandro.ochoa@duke.edu",
           comment = c(ORCID = "0000-0003-4928-3403")),
    person(given = "John D.",
           family = "Storey",
	   role = "aut",
	   email = "jstorey@princeton.edu",
           comment = c(ORCID = "0000-0001-5992-402X"))
    )
Encoding: UTF-8
LazyData: true
Description: GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait models.  This test conditions on the trait, which makes it immune to confounding by unmodeled environmental factors.  Population structure is modeled via logistic factors, which are estimated using the `lfa` package.
Imports: methods, lfa
Depends: R (>= 4.0)
Suggests: knitr, ggplot2, testthat, BEDMatrix, genio
VignetteBuilder: knitr
License: GPL (>= 3)
biocViews: SNP, DimensionReduction, PrincipalComponent,
        GenomeWideAssociation
BugReports: https://github.com/StoreyLab/gcatest/issues
URL: https://github.com/StoreyLab/gcatest
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
git_url: https://git.bioconductor.org/packages/gcatest
git_branch: RELEASE_3_22
git_last_commit: 99d0349
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 04:02:55 UTC; biocbuild
Author: Wei Hao [aut],
  Minsun Song [aut],
  Alejandro Ochoa [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4928-3403>),
  John D. Storey [aut] (ORCID: <https://orcid.org/0000-0001-5992-402X>)
Maintainer: Alejandro Ochoa <alejandro.ochoa@duke.edu>
Built: R 4.6.0; ; 2026-04-27 07:23:50 UTC; unix
