calcCounts              Calculate cluster cell counts
calcMedians             Calculate cluster medians
calcMediansByClusterMarker
                        Calculate medians (by cluster and marker)
calcMediansBySampleMarker
                        Calculate medians (by sample and marker)
createContrast          Create contrast matrix
createDesignMatrix      Create design matrix
createFormula           Create model formula and corresponding data
                        frame of variables
diffcyt                 Run 'diffcyt' pipeline
generateClusters        Generate clusters
plotHeatmap             Plot heatmap
prepareData             Prepare data
testDA_GLMM             Test for differential abundance: method
                        'diffcyt-DA-GLMM'
testDA_edgeR            Test for differential abundance: method
                        'diffcyt-DA-edgeR'
testDA_voom             Test for differential abundance: method
                        'diffcyt-DA-voom'
testDS_LMM              Test for differential states: method
                        'diffcyt-DS-LMM'
testDS_limma            Test for differential states: method
                        'diffcyt-DS-limma'
topClusters             Alias for 'topTable' (deprecated)
topTable                Show table of results for top clusters or
                        cluster-marker combinations
transformData           Transform data
