Package: CountClust
Type: Package
Title: Clustering and Visualizing RNA-Seq Expression Data using Grade
        of Membership Models
Version: 1.25.0
Date: 2016-03-13
Authors@R: c(
    person("Kushal", "Dey", email = "kkdey@uchicago.edu", role = c("aut","cre")),
    person("Joyce", "Hsiao", email = "joyce.hsiao1@gmail.com", role = "aut"),
    person("Matthew", "Stephens", email = "stephens999@gmail.com", role ="aut"))
Maintainer: Kushal Dey <kkdey@uchicago.edu>
Description: Fits grade of membership models (GoM, also known as admixture models) to cluster RNA-seq gene expression count data, identifies characteristic genes driving cluster memberships, and provides a visual summary of the cluster memberships.
Depends: R (>= 3.4), ggplot2 (>= 2.1.0)
URL: https://github.com/kkdey/CountClust
License: GPL (>= 2)
LazyData: true
Encoding: UTF-8
Imports: SQUAREM, slam, maptpx, plyr(>= 1.7.1), cowplot, gtools,
        flexmix, picante, limma, parallel, reshape2, stats, utils,
        graphics, grDevices
Suggests: knitr, kableExtra, BiocStyle, Biobase, roxygen2,
        RColorBrewer, devtools, xtable
VignetteBuilder: knitr
biocViews: ImmunoOncology, RNASeq, GeneExpression, Clustering,
        Sequencing, StatisticalMethod, Software, Visualization
RoxygenNote: 6.0.1
PackageStatus: Deprecated
Author: Kushal Dey [aut, cre],
  Joyce Hsiao [aut],
  Matthew Stephens [aut]
Built: R 4.6.0; ; 2026-04-29 07:28:12 UTC; unix
