# Generated by roxygen2: do not edit by hand

export(DESeq2.createRmd)
export(DESeq2.length.createRmd)
export(DSS.createRmd)
export(EBSeq.createRmd)
export(NBPSeq.createRmd)
export(NOISeq.prenorm.createRmd)
export(TCC.createRmd)
export(checkDataObject)
export(checkTableConsistency)
export(check_compData)
export(check_compData_results)
export(check_phyloCompData)
export(compData)
export(convertListTocompData)
export(convertListTophyloCompData)
export(convertcompDataToList)
export(convertphyloCompDataToList)
export(edgeR.GLM.createRmd)
export(edgeR.exact.createRmd)
export(generateCodeHTMLs)
export(generateSyntheticData)
export(lengthNorm.limma.createRmd)
export(lengthNorm.sva.limma.createRmd)
export(listcreateRmd)
export(logcpm.limma.createRmd)
export(phyloCompData)
export(phylolm.createRmd)
export(runComparison)
export(runComparisonGUI)
export(runComparisonShiny)
export(runDiffExp)
export(sqrtcpm.limma.createRmd)
export(summarizeSyntheticDataSet)
export(ttest.createRmd)
export(voom.limma.createRmd)
export(voom.ttest.createRmd)
exportClasses(compData)
exportClasses(phyloCompData)
import(KernSmooth)
import(MASS)
import(ROCR)
import(caTools)
import(edgeR)
import(ggplot2)
import(gplots)
import(grid)
import(gtools)
import(knitr)
import(lattice)
import(limma)
import(markdown)
import(methods)
import(modeest)
import(rmarkdown)
import(sm)
import(stringr)
import(vioplot)
importFrom(grDevices,heat.colors)
importFrom(graphics,axis)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,title)
importFrom(shiny,actionButton)
importFrom(shiny,checkboxGroupInput)
importFrom(shiny,fluidRow)
importFrom(shiny,htmlOutput)
importFrom(shiny,incProgress)
importFrom(shiny,numericInput)
importFrom(shiny,observeEvent)
importFrom(shiny,reactive)
importFrom(shiny,renderText)
importFrom(shiny,renderUI)
importFrom(shiny,selectInput)
importFrom(shiny,shinyApp)
importFrom(shiny,stopApp)
importFrom(shiny,uiOutput)
importFrom(shiny,withProgress)
importFrom(shinydashboard,box)
importFrom(shinydashboard,dashboardBody)
importFrom(shinydashboard,dashboardHeader)
importFrom(shinydashboard,dashboardPage)
importFrom(shinydashboard,dashboardSidebar)
importFrom(stats,as.dist)
importFrom(stats,cor)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,loess)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,pf)
importFrom(stats,predict)
importFrom(stats,pt)
importFrom(stats,qf)
importFrom(stats,qt)
importFrom(stats,rexp)
importFrom(stats,rnbinom)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(utils,head)
importFrom(utils,packageVersion)
