Package: cellscape
Title: Explores single cell copy number profiles in the context of a
        single cell tree
Version: 1.36.0
Authors@R: c(
    person("Shixiang", "Wang", , "w_shixiang@163.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9855-7357")),
    person("Maia", "Smith", , "maiaannesmith@gmail.com", role = "aut")
  )
Description: CellScape facilitates interactive browsing of single cell
    clonal evolution datasets. The tool requires two main inputs: (i) the
    genomic content of each single cell in the form of either copy number
    segments or targeted mutation values, and (ii) a single cell
    phylogeny. Phylogenetic formats can vary from dendrogram-like
    phylogenies with leaf nodes to evolutionary model-derived phylogenies
    with observed or latent internal nodes. The CellScape phylogeny is
    flexibly input as a table of source-target edges to support arbitrary
    representations, where each node may or may not have associated
    genomic data. The output of CellScape is an interactive interface
    displaying a single cell phylogeny and a cell-by-locus genomic heatmap
    representing the mutation status in each cell for each locus.
License: GPL-3
Depends: R (>= 3.3)
Imports: dplyr (>= 0.4.3), gtools (>= 3.5.0), htmlwidgets (>= 0.5),
        jsonlite (>= 0.9.19), reshape2 (>= 1.4.1), stringr (>= 1.0.0)
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Visualization
Encoding: UTF-8
RoxygenNote: 7.2.3
git_url: https://git.bioconductor.org/packages/cellscape
git_branch: RELEASE_3_23
git_last_commit: c621319
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-28 21:08:03 UTC; biocbuild
Author: Shixiang Wang [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9855-7357>),
  Maia Smith [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Built: R 4.6.0; ; 2026-04-29 22:26:14 UTC; unix
