##Namespace file for arrayQuality

import("methods")
import("marray")

importFrom("hexbin", "BTY", "hexbin")

importFrom("graphics", "abline", "axis", "box", "coplot", "frame",
           "hist", "layout", "legend", "mtext", "panel.smooth", "par",
           "plot", "title")

importFrom("grDevices", "dev.off", "rainbow")

importFrom("grid", "gpar", "pushViewport", "upViewport", "viewport")

importFrom("gridBase", "baseViewports")

importFrom("limma", "backgroundCorrect", "controlStatus", "getLayout",
           "normalizeWithinArrays", "read.maimages", "readGAL",
           "readGPRHeader", "readSpotTypes")

importFrom("RColorBrewer", "brewer.pal")

importFrom("stats", "density", "IQR", "lm", "lowess", "mad", "median",
           "quantile", "sd", "var")

importFrom("utils", "data", "write.table")


export("readAgilent","readcontrolCode","agQuality","EMSplit", 
       "getSpikeIds", "getSpikeIndex", "gpQuality", "globalQuality", 
       "maQualityPlots", "meeboQuality", "meeboQualityPlots", "heeboQuality",
       "heeboQualityPlots","PRv9mers", "PRvQCHyb", "qualBoxplot",  "qualityScore","qcScore",
       "readGPR","readSpikeTypes", "readSpot",  "slideQuality", "scaleRefTable",
       "spotQuality","HeeboSpotTypes","MeeboSpotTypes","controlCodeHeebo",
       "controlCodeMeebo")

